Cherel M, Budin F, Prastawa M, Gerig G, Lee K, Buss C, Lyall AE, Consing KZ, Styner M Proc SPIE Int Soc Opt Eng 2015 Feb;9413 PMID: 26089584 Abstract Automatic tissue segmentation of the neonate brain using Magnetic Resonance Images (MRI) is extremely important to study brain development and perform… read more →
Sabuncu MR, Balci SK, Shenton ME, Golland P Med Image Comput Comput Assist Interv 2008;11(Pt 2):381-9 PMID: 18982628 Abstract We present iCluster, a fast and efficient algorithm that clusters a set of images while co-registering them using a parameterized, nonlinear transformation model. The output is a small number of template… read more →
Rathi Y, Malcolm J, Bouix S, Tannenbaum A, Shenton ME J Comput 2010 Apr;2(4):1-11 PMID: 26029473 Abstract Two key aspects of coupled multi-object shape analysis and atlas generation are the choice of representation and subsequent registration methods used to align the sample set. For example, a typical brain image can… read more →
Del Re EC, Gao Y, Eckbo R, Petryshen TL, Blokland GA, Seidman LJ, Konishi J, Goldstein JM, McCarley RW, Shenton ME, Bouix S J Neuroimaging 2016 Jan-Feb;26(1):28-36 PMID: 26585545 Abstract UNLABELLED: Brain masking of MRI images separates brain from surrounding tissue and its accuracy is important for further imaging analyses.… read more →
Kulkarni P, Kenkel W, Finklestein SP, Barchet TM, Ren J, Davenport M, Shenton ME, Kikinis Z, Nedelman M, Ferris CF PLoS ONE 2015;10(5):e0125748 PMID: 25955025 Abstract Traumatic brain injury (TBI) can occur anywhere along the cortical mantel. While the cortical contusions may be random and disparate in their locations, the… read more →
Balci SK, Golland P, Shenton M, Wells WM Med Image Comput Comput Assist Interv 2007;10(WS):23-30 PMID: 20224762 Abstract In this work, we extend a previously demonstrated entropy based groupwise registration method to include a free-form deformation model based on B-splines. We provide an efficient implementation using stochastic gradient descents in… read more →
Iosifescu DV, Shenton ME, Warfield SK, Kikinis R, Dengler J, Jolesz FA, McCarley RW Neuroimage 1997 Jul;6(1):13-25 PMID: 9245652 Abstract An automated registration algorithm was used to elastically match an anatomical magnetic resonance (MR) atlas onto individual brain MR images. Our goal was to evaluate the accuracy of this procedure… read more →
Martin-Fernandez M, Bouix S, Ungar L, McCarley RW, Shenton ME Med Image Comput Comput Assist Interv 2005;8(Pt 1):515-22 PMID: 16685885 Abstract In this paper, we present an evaluation of seven automatic brain tissue classifiers based on level of agreements. A number of agreement measures are explained, and we show how… read more →
Pohl KM, Fisher J, Levitt JJ, Shenton ME, Kikinis R, Grimson WE, Wells WM Med Image Comput Comput Assist Interv 2005;8(Pt 1):310-8 PMID: 16685860 Abstract We present a statistical framework that combines the registration of an atlas with the segmentation of magnetic resonance images. We use an Expectation Maximization-based algorithm… read more →
Pohl KM, Bouix S, Nakamura M, Rohlfing T, McCarley RW, Kikinis R, Grimson WE, Shenton ME, Wells WM IEEE Trans Med Imaging 2007 Sep;26(9):1201-12 PMID: 17896593 Abstract We introduce an algorithm for segmenting brain magnetic resonance (MR) images into anatomical compartments such as the major tissue classes and neuro-anatomical structures… read more →
